Reference

All functions
FlowSum()	Flow Sum Calculation
IonContrib()	Ion Matrix Calculation
MBSS.Ion.Data	MBSS.Ion.Data
MBSS.Ion.Ref	MBSS.Ion.Ref
MBSS.PHI	MBSS.PHI
MBSS.flow	MBSS.flow
MapTaxaObs()	Taxa Observation Maps
PHIcalc()	PHI Calculation
metric.scores()	Score metrics
metric.values()	Calculate metric values
metric.values.algae()	Calculate Metric Values for Algae
metric.values.bugs()	Calculate Metric Values for Benthic Macroinvertebrates
metric.values.fish()	Calculate Metric Values for Fish
metrics_scoring	metrics_scoring
qc_taxa()	Quality Control Check on User Data Against Master Taxa List
runShiny()	run MBSStools Shiny Example
shp_strata_bugs	GIS shapefile, MBSS strata, bugs
shp_strata_fish	GIS shapefile, MBSS strata, fish
shp_strata_msw	GIS shapefile, MBSS (MSW) strata, bugs
strata()	Assign MBSS strata
taxa_bugs_family	taxa_bugs_family
taxa_bugs_genus	taxa_bugs_genus
taxa_fish	taxa_fish