Release - 2023-02-10
- fix: Use
na.omit for tdox calculation in Shiny, Issue #24- Shiny would crash with too many mismatched DO and temperature measurements
Release - 2022-11-14
- fix: Update handling of data to allow schmidt data and plot function to work
Release - 2022-11-14
- refactor: Shiny heatmap display not working with all files as plotly
- Change to static ggmap object
Release - 2022-11-14
- fix: Update shiny display plots to work with non-standard dates
Release - 2022-11-11
- fix: Update rLakeAnalyzer portion of Shiny app
Release - 2022-11-04
- feat: Add function to aid in transforming date time fields
- fun.DateTimeFormat
- Update Vignette to show its use
- Update Shiny app to use the new function on imported data
Release - 2022-10-21
- fix: typo in plot_heatmap updates
- refactor: Change shiny to use rLA style heat map.
Release - 2022-10-21
- refactor: Change heatmap
- contours to FALSE
- colors to rLakeAnalyzer colors
Release - 2021-09-30
- refactor: Update Shiny calculate sidebar “No Date” to “No Depth”
- refactor: Update Shiny calculate sidebar to remove WSPD from label
Release - 2021-08-24
- fix: Update tdox() from lm to glm for calculation
Release - 2021-08-23
- fix: Update tdox() to use input value for DO instead of 3
- refactor: Update tdox() example for tdox_4
Release - 2021-08-05
- fix: Update stratification() plot for julian day
- %j starts with 1 so subtract 1 to keep Jan 1 as day 1 with origin date of “2004-01-01”.
- refactor: Update stratification() plot with range of data, Issue #22
- refactor: Update stratification() plot with theme_bw() to match other plots
Release - 2021-08-02
- docs: Bump to version 1.0 for release
Release - 2021-08-02
- fix: Update Shiny app folder for aggregate function
- Needed the same fix as Calculation files
Release - 2021-08-02
- fix: Update Shiny app order of operations for import/upload of files
- Code was removing the Results/data-input folder and not recreating it
- refactor: Change default oxythermal temp from 30 to 20 in Shiny app
Release - 2021-07-29
- refactor: Update Shiny Server.R
- Rework directory exists code, make consistent
- Update sink message for area file
- Update file name for oxythermal plot output
- Move DO plots inside of DO if statement with oxythermal and TDOx
- Add error condition for oxythermal plot when no data to plot
- For when have units (F) different than default threshold (30 C)
- Change TDOx file output name
- Update plots for measurement 2
- heat map 2
- depth profile 2
Release - 2021-07-29
- refactor: Update Shiny rLA plot names to be consistent.
Release - 2021-07-29
- refactor: Update Shiny rLA plot names to be consistent.
Release - 2021-07-28
- refactor: Change default temp operator in plot_oxythermal
- Update help text and function defaults to match example
- refactor: Update Shiny app
- Calculation
- Add Stratification method pull down
- Add oxythermal inputs (temp and do)
- Add TDOx value input
- function: Add Shiny app function to calculate stratification with different methods based on user input
- docs: Add tidyr package to DESCRIPTION
Release - 2021-07-26
- docs: Update vignette examples
Release - 2021-07-26
- docs: Rename vignette
- docs: Add plotting example for TDO3 to vignette, Issue #21
Release - 2021-07-16
- fix: Stratification, update column reference. Undo change in v0.1.1.9007
- feature: Add TDOx function, Issue #21
Release - 2021-07-16
- refactor: Stratification, update a hard coded column reference
- refactor: Stratification, update code to allow for only 2 depths, Issue #20
Release - 2021-07-16
- fix: Change Results folder reference in global to drop “.”
- Fails in Linux with the “.” in file.path
Release - 2021-07-16
- fix: Revert Shiny app to v0.1.1 and redo changes
- Shiny app Help as HTML conflicts with file upload. Redesign as non-HTML
- Remove semicolon as available delimiter for import files
- Shiny Calculate tab labels ‘measurement’ to ‘value’
- Ensure all uploaded data files going to Results/data_input
- Add tooltips to tab_Calc
- Add
ShinyBS to global.R
- feat: Add missing function fun.write.log() to fun.Helper.R
- refactor: Rename log files with prefix “log”
- refactor: Use global “path_results” in server.R
- docs: Update Vignette with
plot_oxythermal() function
- docs: Update oxythermal plots in function help and vignette
- example to use <= 68 rather than >= 68
- Combination plot; oxythermal, heat map temp, heat map DO
Release - 2021-07-13
- fix: Unwind some changes to Shiny app. App won’t allow for upload of files
- Combine files tab is now working.
- fix:
AggregateFiles() to agg_depth_files() in server.R
- fix: Shiny, in Aggregate section replace “import” folder with “Results/data_input” folder
Release - 2021-07-13
- refactor: Shiny app update.
- docs: Update README with example to run Shiny app.
Release - 2021-07-09
- refactor: Shiny import remove semicolon as available delimiter
- docs: Add packages used in Shiny app to DESCRIPTION
- feature: Add tooltips to some inputs in Shiny app with shinyBS package
- docs: Add shinyBS to DESCRIPTION
- feature: Add plot_oxythermal function, Issue #18
Released - 2021-06-08
- refactor: Organize Results folder, Issue #14
- refactor: Drop import files in new format
- docs: Add ggplot versions of plots to Vignette for rLakeAnalyzer examples
Released - 2021-06-04
- release: Update version for interim release
Released - 2021-06-04
- feature: Shiny, add third file
- Import
- Display
- Plot, screen
- Plot, calculate
- refactor: Add new daily depth mean file with temp and DO from example lake
Released - 2021-06-03
- refactor: Add gridExtra package to Shiny global.R and DESCRIPTION
- refactor: Add wind speed data to laketest dataset
- feature: Add plot_ts function for generic plotting by date (and not depth)
- feature: Add data
testlake_wind
Released - 2021-06-03
- refactor: Add example to plot_depth showing horizontal line
- feature: Remove minimum values outputs for startification()
- refactor: Add units as input for stratification(), Issue #1
Released - 2021-06-02
- refactor: Rename AggregateFiles to agg_depth_files
- refactor: Add sections to Vignettee for LakeMonitoR functions
- feature: Add minimum value outputs to stratification()
- refactor: Add minimum value to stratification plot
Released - 2021-05-25
- refactor: Update Shiny app code to avoid error when upload to ShinyApps.io
- Blank directories don’t upload.
- Wrote code to ensure directories exist prior to using them.
Released - 2021-05-24
- feature: Add ability to combine files to the Shiny app
- refactor: Add source column to AggregateDepthData function output
Released - 2021-05-21
- feature: Add function to combine depth data files, Issue #13
- AggregateDepthData
- Tweaked port of AggregateFile function from ContDataQC package
- docs: Update README to use remotes instead of devtools
- feature: Add internal function fun.Msg.Status for constructing user feedback
- Port of same function from ContDataQC package
- feature: Example data files for use with AggregateDepthData function
- Included in extdata as CSV files
Released - 2021-05-03
- refactor: lake_summary_stats
- Fix JulianDay stats. Conversion of TimeFrame_Value to character caused errors.
Released - 2021-04-27
- refactor: lake_summary_stats
- Fix calculation and grouping for output
- refactor: Remove RussWood_FixedID.csv from extdata folder
- style: Trim lines to 80 characters
- docs: Add to DESCRIPTION
Released - 2021-04-16
- refactor: stratification
- change default min_days from 20 to 1
- add global variable bindings
- tests: Update plot_depth test for name change
- refactor: Add global variable bindings
- stratification
- daily_depth_means
- lake_summary_stats
Released - 2021-04-07
- refactor: Shiny, “min DO” to “min measurement”
- refactor: Shiny, Stratification, default from 20 to 1
- refactor: Shiny, plot_depth stratification, lines to polygon
Released - 2021-04-02
- style: Fix spelling, devtools::spell_check()
- NEWS
- stratification.R
- data.R
- style: Fix items from goodpractice::gp()
- Trim lines to 80 characters
- plot_heatmap.R
- lake_summary_stats.R
- tab_Calc.R
- tab_Help.R
- tab_Import.R
- server.R
- Replace ‘=’ with ‘<-’
Released - 2021-03-17
- refactor: lake_summary_stats, add missing %>% in stats function, Issue #12
Released - 2021-03-17
- refactor: Remove lake_summary_stats from Shiny app
- refactor: Shiny, add plot_heatmap
- refactor: Shiny, rename rLakeAnalyzer heat map
- refactor: stratification, add events plot to output list, Issue #7
- refactor: Shiny, add stratification plot to calculation
- refactor: Shiny, add stratification lines to depth profile plot in calculation
Released - 2021-03-16
- refactor: Update version number in shiny UI
Released - 2021-03-16
- refactor: Update maps in Shiny to use ggplotly dynamicTicks = TRUE
- refactor: Update heatmap in Shiny
- refactor!: Rename depth_plot to plot_depth
- feature: Add plot_heatmap, Issues #6 and #10
- refactor: Update Shiny server with revised plot function names
Released - 2021-03-05
- feature: Add lake_summary_stats
- refactor: Add dplyer to DESCRIPTION Imports
Released - 2021-02-25
- docs: DESCRIPTION, remove ContDataQC, too many dependencies
Released - 2021-02-25
- docs: DESCRIPTION, ContDataQC package, add remote rather then removing from Imports
Released - 2021-02-25
- docs: DESCRIPTION, remove ContDataQC package, causes build failure
Released - 2021-02-25
- docs: Updated README for example install code
- refactor: Update stratification() to handle data that is 100% stratified , Issue #9
- refactor: Update stratification() to handle data that is 0% stratified , Issue #9
- docs: DESCRIPTION, add ContDataQC package for date helper function
Released - 2021-02-01
- refactor: Update temporary settings to inputs for depth_plot()
- feature: Add scatterplot depth profile and heatmap (Issues #6) for Shiny input
Released - 2021-01-28
- refactor: Update stop message for depth_plot() column QC
Released - 2021-01-28
- refactor: Add internal QC for column headers for depth_plot(), Issue #5
- tests: Add test for depth_plot() ggplot object, Issue #5
- refactor: Add data-raw to create qc object for depth_plot() test, Issue #5
- docs: Example file for depth_plot() saved as RDA forced DEPENDS on R >= 3.5.0
Released - 2021-01-28
- feature: Add depth_plot function to return a depth profile plot, Issue #5
- feature: Add laketest data for use with depth_plot()
Released - 2021-01-19
- docs: Update codecov badge in README
Released - 2021-01-19
- refactor: Remove unneeded concatenation of a constant
- refactor: Replace 1:foo(bar) with seq_len(foo(bar))
Released - 2021-01-19
- refactor: Remove docs folder
- Using GitHub Action to build pkgdown site
Released - 2021-01-19
- style: Remove blank lines at end of script
- daily_depth_means
- data
- export_rLakeAnalyzer
- LakeMonitoR
- runShiny
- stratification
- style: Trim lines to 80 characters
- runShiny
- daily_depth_means
- data
- export_rLakeAnalyzer
- stratification
- refactor: Add items to .Rbuildignore and .gitignore
- _other folder
- NEWS.rmd
- README.RMD
- Switch setting to use gh-pages branch
- tests: Add two tests for stratification (dates and events)
- tests: Add test for export_rLakeAnalyzer
- docs: Add all extra export_rLakeAnalyzer examples to dontrun
- Comment out failing schmidt.plot()
- refactor: Add missing parameters to function call
- docs: Update DESCRIPTION license
Released - 2021-01-19
- tests: Add test for daily_depth_means
Released - 2020-12-27
- docs: ReadMe, Add license badge
- docs: ReadMe, Add CodeFactor badge
- docs: ReadMe, Add lifecycle badge
- docs: ReadMe, Add maintenance badge
- docs: ReadMe, Add issues badge
- docs: ReadMe, Add release badge
- docs: ReadMe, Add download badge
- docs: ReadMe, Add codecov badge
- ci: Add GitHub Action, CI
- docs: ReadMe, Add CMD Check badge
- ci: Add GitHub Action, pkgdown
- docs: Remove docs folder from main branch
- docs: GitHub redirect web page to gh-pages branch
- ci: Add GitHub Action, test coverage
- docs: ReadMe, rework md as rmd
Released - 2020-11-13 * server.R + Add inputs to sink. + Min days input wasn’t getting used. + Min days input to numeric. * stratification.R + Convert min_days to numeric as a QC check.
Released - 2020-11-13 * stratification.R + Add number of days to column name in output, Issue #3. * check + Add and declare packages for functions in DESCRIPTION and code.
Released - 2020-10-27
- Shiny, ui.R
- Update version number in header.
Released - 2020-10-27
- Shiny, server.R
- Add error checking for column names and upload files, Issue #1
Released - 2020-10-26
- Update Shiny app.
- Add example files for Shiny app.
Released - 2020-10-22
- ReadMe.md
- Fix typo in install_github example code.
- Add function export_rLakeAnalyzer
- Convert data frame to rLakeAnalyzer input format.
- DESCRIPTION
- Imports: reshape2
- Suggests: rLakeAnalyzer and ggplot2
- Data.R
Released - 2020-10-22
- Add Shiny app.
- runShiny.R
- Add function to run shiny app.
Released - 2020-10-20
- Interim version.
- Both functions fully operational.
- Update pkgdown.
Released - 2020-10-20
- Remove docs (pkgdown) from gitignore
Released - 2020-10-20
- Add pkgdown documentation.
Released - 2020-10-20
- Update data-raw and data with full records.
- Use full raw data.
- Zip raw data file.
- Update data.R
Released - 2020-10-19
- Add stratification function.
Released - 2020-10-19
- Update daily_depth_means function.
- Add data file, laketemp_ddm (output of daily_depth_means function).
Released - 2020-10-16
- Add laketemp data
- Add functions.
- daily_depth_means
- lake_strat