Generate Reports, File

Subfunction for generating reports. Needs to be called from ContDataQC(). Requires knitr() and pandoc. Different reports (in Word) are created using the RMD files in this package depending on the input fun.myFile.Prefix. Values are "QC", "DATA", or "STATS". The 'file' version works on a single (or vector) of files.

fun.Report.File(
  fun.myFile,
  fun.myDir.import = getwd(),
  fun.myDir.export = getwd(),
  fun.myFile.Prefix,
  fun.myReport.format,
  fun.myReport.Dir
)

Arguments

fun.myFile

Single file name.

fun.myDir.import

Directory for import data. Default is current working directory.

fun.myDir.export

Directory for export data. Default is current working directory.

fun.myFile.Prefix

Valid prefixes are "QC", "DATA", or "STATS". This determines the RMD to use for the output.

fun.myReport.format

Report format (docx or html). Default is specified in config.R (docx). Can be customized in config.R; ContData.env$myReport.Format.

fun.myReport.Dir

Report (rmd) template folder. Default is the package rmd folder. Can be customized in config.R; ContData.env$myReport.Dir.

Value

Creates a Word (or HTML) file in the specified directory.

Examples

#Not intended to be accessed independent of function ContDataQC().